Whole genome re-sequencing of Oncorhynchus tshawytscha: scale or oper... - SRA

SRX24209342: Whole genome re-sequencing of Oncorhynchus tshawytscha: scale or operculum
1 DNBSEQ (DNBSEQ-G400) run: 39.4M spots, 15.8G bases, 8.9Gb downloads

Design: DNA was sheared using a COVARIS LE220 with duty 20, PIP450, cycles 200, and with a total time of 90 seconds (with a pulse spin after 45 seconds). The library was constructed following the MGIEasy PCR-Free DNA Library Prep Set (MGI Tech Co.). Indexed libraries were pooled and sequenced on a MGISEQ-G400 sequencer with paired-end 200bp.

Submitted by: University of Victoria

Study: Whole genome resequencing of Fraser River (British Columbia, Canada) Chinook salmon

PRJNA1090956 • SRP497271 • All experiments • All runs

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Chinook salmon were sampled from multiple streams in the Fraser River (British Columbia, Canada). Whole genome resequencing was used to identify variants from these salmon. The goal of this project was to generate a SNP panel that could distinguish these sample locations for future projects and for conservation efforts. A further goal was to also establish a resource for Chinook salmon researchers.

Sample: Fraser River (British Columbia, Canada) Chinook salmon whole genome resequencing

SAMN40917688 • SRS20979571 • All experiments • All runs

Organism: Oncorhynchus tshawytscha

Library:

Name: Torpy_3_2

Instrument: DNBSEQ-G400

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 39.4M spots, 15.8G bases, 8.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR28610970	39,379,229	15.8G	8.9Gb	2024-04-10

ID:: 32521041

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